Scaffold Ga0210390

Basic Information
Taxon OID	3300021474 Open in IMG/M
Scaffold ID	Ga0210390_10000007 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	270308
Total Scaffold Genes	260 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	193 (74.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

270308

Total Scaffold Genes

260 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

193 (74.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F001772	Metagenome / Metatranscriptome	637	Y
F004015	Metagenome / Metatranscriptome	457	Y
F006150	Metagenome / Metatranscriptome	380	Y
F042509	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_10000007149	F006150	GAG	MFSGTNPSRSWCAAAVGIVCLMLALCPRLTGAAELTIEELKQRVANATLADRPPLCIRICERQLDVADRFYVAGDSEKAGSALTDVVAFAELARDYAIQTHKHEKPSEIAIRKIARKLFDLKHTVSHDDQQQVQNAVDRLERVRDDLLFAMFPKGGKK
Ga0210390_10000007183	F001772	AGG	MRNKILFIAGGALLAISGYLWGSRNATVAYAGGQTQPDYSTMPAHGSVPKSYGRVAAVIADQIGTGVIFEDNDGTIRFVSMTGMKEGELARYDQTPTHGGIPKSYGHLVGAVVDPKGTGLVFEDSAGTIRFVTIAGKNEAELTRN
Ga0210390_1000000721	F000249	GGAGG	MKKFLLIFAIPLLFSVLASAQTTPVSTLPSNNDDPQPRMFFPRDMFWGWAEFDLAPPHNEIDPGICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGQTQLRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGIEHSWGVGIYIDKGFEFRITQHFLFDRLGARDTNLGAADQGNNGPWGRYMTVGVRKYFGTRRW
Ga0210390_1000000733	F004015	GGTGG	VLLERLSSHHTDVYNILWAVVFGFATLNILSLAVRRSEPNRRGLSFGELMAVMVVLLSIFLLGAELLNFIHIFPIKIQR
Ga0210390_1000000797	F042509	N/A	MALVLLPFSRPAAAKSICGGCEAAIVGVAVGVGTAVGVGIYLIHRGHTSLTGCVRQTDNGLSLTAKDGNSYELVNPSSEVRAGERLSLRGHKIKGTSGRAFQVDHVGRDYGACAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210390_10000007

Overview

Ecosystem & Geography

Associated Families

Sequences