Scaffold Ga0210390_10000002

Overview

Basic Information

• Taxon OID: 3300021474
• Scaffold ID: Ga0210390_10000002
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 953902
• Total Scaffold Genes: 910
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 661 (72.64%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000078	Metagenome / Metatranscriptome	2550	Y
F001265	Metagenome / Metatranscriptome	735	Y
F001517	Metagenome / Metatranscriptome	679	Y
F001818	Metagenome / Metatranscriptome	630	Y
F002108	Metagenome / Metatranscriptome	592	Y
F002346	Metagenome / Metatranscriptome	568	Y
F006072	Metagenome / Metatranscriptome	382	Y
F015759	Metagenome / Metatranscriptome	252	Y
F018412	Metagenome / Metatranscriptome	235	Y
F034490	Metagenome / Metatranscriptome	174	Y
F043595	Metagenome / Metatranscriptome	156	Y
F105764	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_10000002368	F000078	GGAG	MHCLRCNRELETGQKSVALYMFAQTVGIKPRQKSTAHRISFCPQCSVSLAMGPPPEGALNLAAWDMIRDLVSSDPALNEAAWEHLRGVVGLLPATGTDGPSRPQSSGGYFEF
Ga0210390_10000002480	F001517	N/A	MTKPHTPPSISAVDQTLVLSSLEHDQLVTAKKHPIPRRHLKGPELLILWSLRLYLLFMMAVVAYQVWLAAR
Ga0210390_10000002512	F018412	GGAG	MNSAINPEAAQPSATQAFEQSDRNPVVSNLIGTGNGGQIPTPLSADSRVTQPGPVVSPNAGLQDYDMDDSADNVQDEAEREG
Ga0210390_10000002578	F043595	AGG	MEQSHCAPYLMGILFYFGIFYLAGLAQWMVLKRITKEVNQHLPYSEQYVASIRAFSPRSVRSPINEIKVWRLHRQLFRESYLPWLHLATWVLMIVFFVLCVQFDRSHSIAHPGVVVLAPRFHSLI
Ga0210390_10000002587	F006072	GGAGG	VSKTAAVVLSFLSFILFANISRAQLIPSGNVYVGVSESDSVDVVNRYTFRGWAASAEDMPFPRYSFFGAVVDTSGYYRKGIQQYDLLLGPRVSHNYGKWRPFVHLLGGFQRETSDGVTHFIVAEDVGGGVDHKFHLLFLHNFSWRLQFDYVHTRLLSANQNEYRGSAGLVWRF
Ga0210390_10000002612	F002108	AGG	MTQTAEQIALEASSVRPEKGTPRPFRVKLRGSILTLIRLPNRRQVRGKLHQLSSTGGLVNLDKPLDEKLVVEFIFHLGETTIREKAQMLFPMWATQGWLQPFRFIDMPEASKTTLETSLTAFMQGLTDPVS
Ga0210390_10000002632	F001265	N/A	MIIARTQSDHHDGPHQLMGTDTQMDDLHTRMVRVTEDLRVIQRELNCAAMQAPSDPELMEAMSALPETEAIQVLCKSLDQMRHFLWFYTQVMSNEPELGDKLRQSSGSQTVEDRNVDSSFLDRLSRADEAVLLRYLAESKERKPN
Ga0210390_10000002638	F034490	GGAG	MDVTQAAAAKSARSVPPESEVRSDLQNALRRCAAGPRKLAGFGLPCANCHLYYPADFDTCPTCNSQERVSAKVTAIPKVQVTTETVPDTSVVEQEREAFLKEFKSQLFAAHAEVTSAPAVCTLGEHHIQGPEAATICKPCYDRLQERLDVCEGALHIDVKEAAQIIYDAVWADPSDPSKTYTNAAGALLGELRKRSGVSSLLGPFHPLAD
Ga0210390_10000002730	F001818	N/A	VGDATPENIAVYRRSWHSYQARRNLVVVLFLSFIFLGVAISKWKLGEAADFAILLGWIGVYLAGGWWLTEWRCPRCGKVFGHRLWTQKCISCDLSKDEVAAAARRKS
Ga0210390_10000002792	F002346	GGAGG	MKLIDQLCAAILFVTAIVNSLLVPRTYTGRIWIFGTILALLFTCMLNVLRIRNSREVRSLKLSCLTANVTMLVLAIALIASIGKARTLQHPQVPFAAALLLAETVFSLGNVD
Ga0210390_1000000288	F105764	GAG	VAKENGQSQRLVLERALEHYLHNVVPSQRMVRLEVMAAYRRSNKKYRELYKRLSVRLES
Ga0210390_10000002882	F015759	AGCAG	MALHASIGLSGEDRQKCSFTMPAKATKLNKHGAAVRLNRELRVGSVVSVNNKQGTQISARVVAQLAAAEGVSTYAIEFVEQDDRAQTFWGIVFPPSTLNA