NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190363_1004983

Scaffold Ga0190363_1004983


Overview

Basic Information
Taxon OID3300021472 Open in IMG/M
Scaffold IDGa0190363_1004983 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7061
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093028Metagenome106N
F096386Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0190363_10049831F093028N/AMDLQEYKKWKSPKGLRLPSGLEIKVRDLSPWDLLVAASNQKEYKPNDPQLIEHLMKKFIVWPEIGKDWEIDDIRPEDFVFLQTKLFESFSLERFDNAVKEVENIKEQHKDFSE
Ga0190363_10049832F096386N/AMSKELSVRPSDLLDPYHEEDAITRFAIDLVALVSDIEREPEIEMPDINPELDSLRKRDLEFKKKYNITLEQARKIVFGDTDGGGGR

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