Scaffold Ga0190363_1000957

Overview

Basic Information

• Taxon OID: 3300021472
• Scaffold ID: Ga0190363_1000957
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17289
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026175	Metagenome	198	N
F084955	Metagenome	111	Y
F100147	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190363_100095713	F084955	AGGAGG	MESSYLTANALDKLIALCPETLKNLDEDAAALAEEIISKYNKEEAKSAEKLIFHAITTVSKYLLTERAKDEELDTLLIYFESLFAGTPENPVEAVIGVFTYYLLSKPHFDSYRHLISSYLFDEIDLGEAA
Ga0190363_100095720	F026175	GAG	MALQSIKILNTGKENITKLLTGLGGYAYAAIGVGNDTTAAAETDEHLLGSETNFKDGNQSYFQNANNSYIAQWNSTWVYNDLPSNEISEAAVAQNATNGTVNCLLRCTFDTIYLDADSSFSLILQVSPTQA
Ga0190363_10009578	F100147	GGA	MLKRYIFHGFIFAELQSFRKSNLDIPVMVLQANVPIWDSTAYDRGFQIPADVLRKSVPKGCVPLFLFHDHRECLGHLCEFKYNPYKKALFAKLKILPQKKEKVLRLIKSEGINGISLELETLEERGKYLNKVLRMKITGAALVDRPACRKCRVKLFK