Scaffold Ga0190363_1000364

Overview

Basic Information

• Taxon OID: 3300021472
• Scaffold ID: Ga0190363_1000364
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26381
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (83.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055333	Metagenome	138	Y
F098394	Metagenome	103	N
F104193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190363_100036421	F098394	N/A	MDVLLAALGSFAALASFTLSLTIWLWRLRRNEIAHLYRRLEQIERRIENIEEDLTELRERVARLEERV
Ga0190363_100036429	F055333	AGGTGG	MGESLQNVRAVKVSLPGRSTGMGAYTQHYLYSIRQQKRLEPHRTEWSRTGRHWEDIYYLLPGKYFLAIKDISNSGKHYCRYALLRVFTPEEYREKVKDKEYVMRNFDHYYRHNAYEIIDLPSEHPPAPYVEVPCECLREENAEY
Ga0190363_100036432	F104193	AGTAGG	MLEKLDRVLELLVERERTFDELKAETSLSDETLNLVIDFFLAHDFATKDNNRIRITDSGRKFLEL