Scaffold Ga0190359_1016833

Overview

Basic Information

• Taxon OID: 3300021471
• Scaffold ID: Ga0190359_1016833
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-2-3_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3354
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003492	Metagenome / Metatranscriptome	483	Y
F015742	Metagenome / Metatranscriptome	252	Y
F030400	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190359_10168331	F003492	N/A	MAELLTDEIIIEKLNEDGFMQEPDAPWILEYIGEQHGGKLDNTSDFIDDNYTLKIYSESTYDGYDIYWCTHDDKPYVSQDGYYYEDYSDWSERALNELESGCDVWIENHIWDSMEWDFNAALEEWWQDVYDELYDEKKDELLDSEEYYWEDED
Ga0190359_10168335	F015742	N/A	MDSKKAYEQFKEEIVDRESAYLCTEVERALDRIINYTDPLDDTMFRDIKASAIKLLKEWH
Ga0190359_10168339	F030400	N/A	MKELCEYGKQKKLARKAQHVEIIKIYGECKGMGQRWYKSPQKSSFPKQYKAAFNKIWR