Scaffold Ga0190359_1004479

Overview

Basic Information

• Taxon OID: 3300021471
• Scaffold ID: Ga0190359_1004479
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-2-3_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7826
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190359_10044792	F011723	GGAGG	MVIYNKGLSRDNSTDDGKEIFSLTSKEEEKYKVRRIIITDVNTNPLLMEIWVERDRIGEAIPLETANDIAPERVIDVDVEIPVGYTFSVKIKPQTSGSQGSVRGWVEYEIIE
Ga0190359_10044793	F009582	GAG	MVERRGRREFVGGTGRAVKEARVDVILQRVEEKIGNELNVFPSHIYRYGVNNIFQRAFAYLLGWKSNGEPQKVAVTSGGLLKTAVSGAGFEEIDTLEGTAGVNWSPTLEFAWTPNRIRFEALNYPYLAKFSVDGVTWSDAVYVDGEQPRDFDINARYVKVRRYGGTDADYFIIGMR
Ga0190359_10044797	F091133	GAG	MGLLDVWDTFTDFVGDWWKAFRDKIPDIKNELWSWVDDIAKFWVERADMFFDILKHTWGEVEDLVEQAKSYADDIVTDAVLCVDNWIQTFGETVAELWNKLEPYVSSIITPIENALDTIQNIKLPSLEDITNSLKSTVDDILNWDIPILNQSISDLWTEANEIWNEIWNNIWTSLNNAWDDINNLWKTINEIPADLWNAIIEGWDGLCDFLLSQGEKFVEKILDIDLPIDDVIEELEKRIKGGGK