NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190361_1026105

Scaffold Ga0190361_1026105


Overview

Basic Information
Taxon OID3300021469 Open in IMG/M
Scaffold IDGa0190361_1026105 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1972
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F067298Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0190361_10261054F067298AGGAGGMVVVIREEDAGRIMRAVVLKKKIMELERQIADLQRRKAELEKEYAGLGINIE
Ga0190361_10261055F009582GGAGGMVERRGRREFVGGTGRAVKEARVDVVLQRVEEKIGNEINVFPSHIYRYGVNNIFQRAFAYLLGWKSNGEPQKVAVTSGGLLKTAISGAGFEKIQTLKGTATVTWSSTLAFAWTPNRIRFEAVDYPYIAKFSTDGVEWTDEIYVDAETPRDFDINAQYIKVRRYGGTDATYWIIGMR
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