Basic Information | |
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Taxon OID | 3300021469 Open in IMG/M |
Scaffold ID | Ga0190361_1005964 Open in IMG/M |
Source Dataset Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4348 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Mexico: Guaymas Basin | |||||||
Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | Depth (m) | 2011 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033663 | Metagenome | 176 | Y |
F048033 | Metagenome | 148 | N |
F057026 | Metagenome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0190361_10059644 | F048033 | AGGAGG | MIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEKLTEDMQKLIKNFRNAGKTIEYMDKDRYDAYKGEVQFHTENFEEE |
Ga0190361_10059647 | F033663 | GAGG | MVQESSEEDVTQVYGIRCKVKNDKIQDWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFLEIKRDTLILRDLVSGKFNILLVIEEEN |
Ga0190361_10059649 | F057026 | AGG | MRGRRKMGRDEQIQVLEEMVCLFEKAMEGLKSAYGSTEDENQKLKLKGGILVFEFVINLMKQKMELLWN |
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