Scaffold Ga0190361_1000871

Overview

Basic Information

• Taxon OID: 3300021469
• Scaffold ID: Ga0190361_1000871
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11694
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033663	Metagenome	176	Y
F050821	Metagenome	144	N
F057026	Metagenome	136	Y
F083515	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190361_10008711	F050821	GGA	MIVKDMYCDYCKQETLHECQSNELWRCVQCQKTRFEVIDIPQNEIDWEKPVRYLWRSGDIAYVTSALAPNILRLDEMKELIEGKRIR
Ga0190361_100087122	F057026	AGGGGG	MGRDEQIQVLEEMVCLFEKAMEGLKSAYESTEDENQKLKLTGGILVFEFVINLIRQKMELLENEE
Ga0190361_100087123	F033663	GAG	MGQESSEENITQVYGIRCKVKNDKIQDWDYDSLTNITFLYKQRRALFKDIQEDGMAVPEFFFEIRRDTLILRDLVLGKFNILLVIEEEN
Ga0190361_10008719	F083515	AGGAGG	MKVRRFESIELLNKFLGKEESGEISVKKVTVVSHISDVFYVFYNEDKNYDIAGKIIDFRNFLVREEKTLDDIIQSIEKERIYWQTIDSPSSKIVLDYLSCLKDQLTISAVAVNEMMREMKKIINEEVLK