NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190360_1002081

Scaffold Ga0190360_1002081


Overview

Basic Information
Taxon OID3300021468 Open in IMG/M
Scaffold IDGa0190360_1002081 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9969
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050821Metagenome144N
F056227Metagenome137N
F057027Metagenome136N
F069552Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0190360_100208114F056227AGGMEDKDIQVLVFHRDKDDKNWISRLANGKVAILHRADPTIPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRVIITPPPRRFVYLESPGDKPAIHSDILSIFDTHDLEYLYVRYPKENRKEVDVPSTESYRDVNIDLRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190360_100208121F057027N/AMARKWDRGIFEEARREVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGNPLDMRGSVFTITSMGNYNYEVVYRKPAKEPEIVDESKIEEIVRKVMSGGNKSKEEILLWVKEYLKVEGVQVSDVVIKSVVDRVVG
Ga0190360_100208122F050821GGAMIVKDMYCDYCKQETLHECRSNEVWRCVQCQNTRFEIINIPRNEIDWEKPVRYLWRSRDIAYVTLALAPNMLRLDEMKELLEGKRIRIPLFKIKDKFLPKYY
Ga0190360_10020813F069552N/AMKKNSIAWFVVECTKSITIQLRCFKCRFVFPDVPRQLVKNFQSLGRGIYSLVFALKNTDCEEEYFLNDIIETDVSSTGFNKADVEVETTIPNDEEYHRLRKLINDWYKQKVDTFPFFLGIIMYSSYRDWRRMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSEAPKFLGTHTYWD
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