Scaffold Ga0190334_1008730

Overview

Basic Information

• Taxon OID: 3300021467
• Scaffold ID: Ga0190334_1008730
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3567
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048033	Metagenome	148	N
F057809	Metagenome	135	N
F096388	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190334_10087301	F057809	AGAAG	MQAWEIETRKGVSLFVGIPYIPTFRYTHCVVEDSWRNAWQPPNTIWRKNFAFGVATAREQLAEEFLATGYTHFLHLDCDIVLRQDTIARMLELDADVVVARYHDKSPLRLPQAFRHSQVPFRRDGPVDFKTNEIFEFPRPDGDVLLSGLGCVLVKREVFEKLKRPFYLFSSEHEELDDYDRVSEDFFFLLKVQNEAKAKVIYAPSINVGHVGEVIVWDKDNIQFI
Ga0190334_10087305	F096388	N/A	MIKVPILDNKENRNWFHQFEHPVYTMLGGNNKSVERKLKQDMKLLKWREWWKNPRKKIDLLSGTEDGYRWRVRLLVNSFGDISVVFDFT
Ga0190334_10087306	F048033	AGGAGG	MIVIRLGDMIVVNVDKDNFYCEREGSSLVDIWEEHARYIGEEDTLYVRQVEGEDLSEDMQKLIKNFRNAGKTIEYMDKDRYDAYKGEVYFHTENFENGE