Scaffold Ga0190334_1006143

Overview

Basic Information

• Taxon OID: 3300021467
• Scaffold ID: Ga0190334_1006143
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4383
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038026	Metagenome	166	Y
F056227	Metagenome	137	N
F098395	Metagenome	103	Y
F100149	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190334_100614312	F038026	GAGG	MLKFMIYKNENDYVLIIEYEDRAERLLASSMKDLIQVIADTTLYNFEGKSKYFEQSYHAKIEIT
Ga0190334_10061433	F098395	AGAAG	MKIEVITPLDLEDFVKRIESLEEDSKLHDSLLHDVFENIDQMQRCLSGLEDRIKHLESNRESYSEE
Ga0190334_10061434	F100149	N/A	MYWSKEEEEILKSLWKKPDITAKIIKERHLPHRTINAIQKKASSLGLTKEKIKIDYEKINEITI
Ga0190334_10061436	F056227	N/A	MEDKDTQVLVFHRDKDDKNWISRLANGKIAILHRADPTIPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHGLEYLYVKYPQENREEVKVSSTDYREVDIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE