NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190334_1005286

Scaffold Ga0190334_1005286


Overview

Basic Information
Taxon OID3300021467 Open in IMG/M
Scaffold IDGa0190334_1005286 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4771
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050821Metagenome144N
F057027Metagenome136N
F098395Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0190334_10052862F098395N/AMKIEIITPLDLEDFVKRIETLEEDSKLRDGLLHDIYENIDQMKKKRLNELEKQIEYLESDKEPYSKSISD
Ga0190334_10052866F057027N/AMARKWDRGIFEEARREVEEREKRIGFLFPPKNRGEETHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGNPLDMRGSVFTITSMGNYNYEVVYRKPAKEPEIVDESKIEEIVRKVMSGGNKSKEEILLWVKEYLKVEGVQVSDVVIKSVVDRVVG
Ga0190334_10052867F050821N/AMYCDYCKQETLHECRSNEVWRCVQCQNTRFEIINIPRNEIDWEKPVRYLWRSGDIAYVTLALAPNMLRLDEMKELLEGKRIRIPLFKIKDKFLPKYY
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