Scaffold Ga0190334_1001369

Overview

Basic Information

• Taxon OID: 3300021467
• Scaffold ID: Ga0190334_1001369
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10632
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050821	Metagenome	144	N
F057027	Metagenome	136	N
F083515	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190334_100136910	F083515	AGGAGG	MKVRRFESIESLSKFLGKEESGEISVKKVTVVSHISDVFYVFYNEGQNYDITSKIIDFRNFLVREEKTLNDIIRSIEQERMYWQSVDSPTSKGISGYLSWLKDQLTMSAVAVNEMMRETKKLLMRRY
Ga0190334_10013692	F057027	N/A	MARKWDRGVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRRKAFKLNSGLATQMWRVVEKAGGDPLNMQGSVFTITSMGNYNYEVVYRKPAKEPEIVDERKIEGIVKKVISSGNIPKENISLWVKEYLKVEGLEVPEAVIESVVNRVVG
Ga0190334_10013693	F050821	GGA	MIVKDMYCDSCKQETLHECQSNELWRCVQCQKTRFEVIDIPQNEIDWEKPVRYLWRSGDIAYVTSTLAPNILRLDEMKELLEGKRIRVPLFKIKDKFLLKYY