Scaffold Ga0190334_1000367

Overview

Basic Information

• Taxon OID: 3300021467
• Scaffold ID: Ga0190334_1000367
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23687
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (50.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036512	Metagenome	169	N
F040420	Metagenome	161	Y
F050064	Metagenome	145	Y
F055334	Metagenome	138	N
F076704	Metagenome	117	N
F084956	Metagenome	111	N
F084957	Metagenome	111	N
F102256	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190334_100036712	F102256	AGAAG	MEREKTNIYSCRNCYLEFYYENRITHCPFCGNKLKWIGQIQENEIEGPIYTLKYSTGEKMQKKIEEEAAIKEAEESWYLWEE
Ga0190334_100036713	F036512	N/A	MGGIIKMYWKVPDYLKRYIRIQELLKNIFSPCDCGEELKKCEKDKKYYAKRAETLAKALAESINLPEPPNPSKEMEEVNPWKFVAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWRENVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190334_100036716	F040420	N/A	MKNINRYIVIGLILSISLTQFLALDTTDTHIYVDGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEQSIEIIEPQADEIIGYVKEDNKKYIRIPVWNDYFYYSNVKIA
Ga0190334_100036718	F050064	N/A	MTPSRKFNHIDDLPLNETQKRYVLEWLAWKFYNLLLKLGIEDGYCKSYDPLLIEDDKCHSYVFDLDDDGRHHPYKNLREIEDKLFNEVVKRIKEESVH
Ga0190334_100036721	F084956	N/A	MIRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELNCVSRFDELAHRYLKEGDQKDYHGTLSEVIQQFIAVAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSAGNAIYVTGDAVDEMATSNKEIYIEDDTILTEWDARQRAERELKTRNELTDAIEITLGDLVYPVFGKVRVNLPGIAKILELKSLRYILDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190334_100036725	F084957	AGGAGG	MNIEDYKKKNTKKIKCPSGLEVTVNNITPYTLLRIVDKLGINPTREEVYTKPVIDALFKAFLKEPVIGKDIEIEDFLREDYIFLHNLIFEKVTLPEE
Ga0190334_100036728	F076704	AGGAGG	MAEYGAVKGWSNRIRIGLESAPNESIWHDGRDPLLNSLTMDTSVDIDKIYVVGSRDAVSMIEGTQEVTGSLERNLYSKNATYNEFIYAGNNSHLDLLAATGMYGESLQSCKILMNTTSNSASADYNRVIYGVKFHSYRTSTAAGDMVTESVDYDATNISTH
Ga0190334_100036729	F055334	AGGA	MTSLVDKLNAVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMEKLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA