NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193947_1061295

Scaffold Ga0193947_1061295


Overview

Basic Information
Taxon OID3300021465 Open in IMG/M
Scaffold IDGa0193947_1061295 Open in IMG/M
Source Dataset NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)590
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070006Metagenome / Metatranscriptome123N
F084184Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0193947_10612951F070006N/AMQSKITQIEPKGTYTNASGTFNKYQVYLANGNNYQFLAKGEFKKQVGETIDFEVTNEQYNTAKLIYKPIQAAPPANREQIIVRQSMVKAAADFHASRPNADIQTVIADAQLLINF
Ga0193947_10612953F084184N/AQDAILYAVSHTLANKGDMSNQTLNDLYDVLDMFKIEENKRYGLYSGTHEGL

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