Scaffold Ga0182009_10172055

Overview

Basic Information

• Taxon OID: 3300021445
• Scaffold ID: Ga0182009_10172055
• Source Dataset Name: Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1040
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060361	Metagenome / Metatranscriptome	133	Y
F064166	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182009_101720552	F060361	GGA	MSDVKRLLRDLGREIDRLAQRNEVLERRLASISGALQGAVRMRAGRAAGTSRAGGGRRGAPPKFDDARARQLRKEYEKGSTSAQLARRYKAALPTILSTLRRAGTKLRRGRPRRKR
Ga0182009_101720553	F064166	N/A	VPVIQMTVVAQSSRPRFTSRGELDAAAFATVAGIDFLCGACDRVVLARVVPKFALAHSFPCPHCGALNEAP