Scaffold Ga0182009_10083957

Overview

Basic Information

• Taxon OID: 3300021445
• Scaffold ID: Ga0182009_10083957
• Source Dataset Name: Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1424
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F006575	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182009_100839571	F002850	GGA	VTGIHADIDALKGLHDALVGYRHAQRDVTARGEDRLTATRASLEAKASRLRAQLELGQAEYTACQDRAAQADPDDPVDCSGYARAVEQNSERLEQIRLWQQRIDAEAGEFSGIAGRFADLLENDLPRIEEHLVA
Ga0182009_100839572	F001698	AGGAG	MAGVVNDIEALAEFRAHLMRFNHDLAENFATIQSHWRELGEIWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGVGRPPEVRGGMAGGTGQWTGRRDRNSR
Ga0182009_100839573	F006575	N/A	TLAAECEDLLYLTRKLLKAAGRARILAVVPGPRMADESGGDRQAQLLEAYADAGLLWTKVVGSSLALAEALIERGEWEDVRALAGLLAGAGEESVATELRIRLGGAVWEAHREQLRAISNTMPPAAIERAINALRAILREVPEEFPDRNREVNSFLPPMASAVHAIMKKQGAEIPYHSRMEHIATGGVAKYPDIVKTSLDELAAEFDGICRRSGEPTT