Scaffold Ga0182009_10023123

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182009_10023123

Scaffold Ga0182009_10023123

Overview

Basic Information
Taxon OID	3300021445 Open in IMG/M
Scaffold ID	Ga0182009_10023123 Open in IMG/M
Source Dataset Name	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2386
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location Name	USA: Nebraska
Coordinates	Lat. (^o)	41.1613	Long. (^o)	-96.6752	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024903	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182009_100231232	F024903	AGGAG	MKIRQMLVLLMFVLLGTWLAAAQDAASDSKSKSDTRTITGCLAKGDNADEFLLTAQDGSTWEIKSSAVNLADHVGHTVAATGVVSNATMHKLKEDTKDVAKDAHMSKSNSEHGHMKITDVQMVSSSCSK

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