Scaffold Ga0182009_10001709

Overview

Basic Information

• Taxon OID: 3300021445
• Scaffold ID: Ga0182009_10001709
• Source Dataset Name: Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5986
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002319	Metagenome / Metatranscriptome	571	Y
F046584	Metagenome	151	Y
F062072	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182009_1000170910	F046584	AGGA	VKTRNVIVVLTLLTCLSLSLNLQAQAGGDVSDQIKKLQQESRDAQMKNDASWAQQHLAEGFVAGNSWGDWQ
Ga0182009_100017098	F062072	AGGTGG	MSSTPFAREQRRSTRVSLKVTIDVQGVSEPLTCEGETILVNLHGALISTTIALKIGTIVKIQVYLTGKTSQAMVCYVDPEQSLHCGMALKKPQNIWGIPLPPDDWHEEESN
Ga0182009_100017099	F002319	GGAG	MSSQAVNLKVTVSVPIDCDFWSEDDGWKGLCKSLSFTVRGSSFEDAKKNMASELQVYIEGILREHSKGSTRRIA