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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021445 Open in IMG/M |
| Scaffold ID | Ga0182009_10000002 Open in IMG/M |
| Source Dataset Name | Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 61550 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (86.44%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Nebraska | |||||||
| Coordinates | Lat. (o) | 41.1613 | Long. (o) | -96.6752 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000621 | Metagenome | 981 | Y |
| F002416 | Metagenome | 561 | Y |
| F013685 | Metagenome | 269 | Y |
| F032806 | Metagenome | 179 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182009_1000000214 | F000621 | N/A | MDVPEDADIGTDGPGLALLAILGTNVHLLEVGRIPNADELYAEAINQAMLERLRRIDAAGGETESGVIIVTFQGYISGVSTLFSRDFHTAFIFKNTEQAEAFITEFADELRNPQILDCRNARSQLP |
| Ga0182009_1000000227 | F002416 | AGGAG | MNYLIEIINSSALPNSRAARFGRRLIGFGLALKTLNGLVAVVLAMTLGALSVTAQTPSGQFFNGSSDQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGICAAVYAFSQGETVPIDNQF |
| Ga0182009_1000000228 | F032806 | GGAGG | MRPRPVRPNIYLPVVRFGVADSDWFSILLISCICYLAPVPFGITLLYVPLQMWTWLFATAGAIAFFNYIRIGRKPYWLQHQLRALLLSHRQYHFIPNSKRPNFTRPWIRDQPDLVHLAKDGAVSVNSVLFEHNNRIWEAHEERWITDWGTTN |
| Ga0182009_1000000230 | F013685 | AGGA | MKKLVKCLLIGVLIGDFLLPTPAQAQWTVFDPAQYSLQIERQIEDANRWLERVKQYSEQINKLAQQLSTMKGILGEAEKLVLHNANLTRTMAQLGQTVRDVFALKRAMETMVISRLSMIRSMKTRLMTGVFDPEADLRDFEEYLRNSIGRTSQNKIATMNRIAMFDATLARLYHDLQTAQARQAGAAQQLKQAKDKLDTELAKPSAEQCASCISDLKLEIAPCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVRATDEAWNSLNIVKDGVFQAIENGGMPSPPRLPQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |