Scaffold Ga0213878_10006225

Overview

Basic Information

• Taxon OID: 3300021444
• Scaffold ID: Ga0213878_10006225
• Source Dataset Name: Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4192
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.28
  • Long. (^o): -43.5919

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019240	Metagenome / Metatranscriptome	231	Y
F043529	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213878_100062251	F019240	AGGA	MERPEIVELLFSALTLAHDAEPLSQFLSARVEWVLSTADPKTLGEESPPNAIKFSGKQGFQELALYLRDSLHVISGDLTGCIMHHQLIFAFGRVRLQSPGASQPVETNIAARITFLRSKITKGQIRISWPLVF
Ga0213878_100062255	F043529	GAG	MSTFTPSPEFDCYYKACRKGDLEAKTVAVNQSPVAALAAASEVTGLPRDNFEVHEISKAEFEGLHRR