Scaffold Ga0206681_10323734

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206681_10323734

Scaffold Ga0206681_10323734

Overview

Basic Information
Taxon OID	3300021443 Open in IMG/M
Scaffold ID	Ga0206681_10323734 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	597
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020789	Metagenome	222	N
F092211	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206681_103237342	F020789	AGGAG	MANNTNKYFTWYVKSRNKVCTFLGADEFDGFVSRQWTDNNGNDCYNFWDIEAKHPRTAVNCKWRNA
Ga0206681_103237343	F092211	GGAGG	MQTNKKPSALADTMFDLSKTFSKSTTSATLHGRFMMLKEMQIFLAEEEVKLNEQIKKAESNV

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