Scaffold Ga0206681_10130582

Overview

Basic Information

• Taxon OID: 3300021443
• Scaffold ID: Ga0206681_10130582
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 983
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007771	Metagenome / Metatranscriptome	345	Y
F010477	Metagenome / Metatranscriptome	303	Y
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206681_101305821	F007771	N/A	METIIHAKNIDKKVRLALYGMLHHSAIKLFPRRMKYVSIKLHLKHDVYDGVAMIEEDTKIINPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGEDYYFSPHEVEAYGLEKGLQL
Ga0206681_101305822	F010477	N/A	MIIQLQIRYLVFIPYLIFVGIMGGNILAESIVVGLALAIYDYLFDNNR
Ga0206681_101305823	F069325	AGGA	MRENGMSVCSNCYRSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNKTWMLHRPTAMFGESKKVTKGLTALTDKQFGVE