Scaffold Ga0206681_10042459

Overview

Basic Information

• Taxon OID: 3300021443
• Scaffold ID: Ga0206681_10042459
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1764
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011529	Metagenome / Metatranscriptome	290	Y
F035723	Metagenome	171	Y
F096068	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206681_100424591	F096068	GGAG	MALYEDIVTFCKKELNIPPDVLVSIEQEDLSEDNVHGWTTDSAEDDEYDIEIDTRLGFKEAI
Ga0206681_100424592	F035723	AGGAG	MVNLITNKEQETKHLRSQSRFYVAGWVANRECENPQELPEECKGDKTVEEWHKEYLTGYGDSVANGECLMNR
Ga0206681_100424594	F011529	N/A	MKWNDATIEKRKLEGIRLRSCRLWLDEKGFHPFLDQNELLRPDMQKSMSCKYNELPKEAWDLMDKYDAEKARKSKYAT