Scaffold Ga0206681_10002499

Overview

Basic Information

• Taxon OID: 3300021443
• Scaffold ID: Ga0206681_10002499
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7789
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088865	Metagenome	109	Y
F091002	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206681_1000249915	F088865	N/A	MSKNYKRYEFKTFQALEKFFINKILPQKNIHSKVIGKVLLVWNRKRKKAA
Ga0206681_1000249919	F091002	AGGAGG	VSSERILKGDVSAAYSELEMKGYAVENLGHQSGEFQIFCDGAYPDKKGVGDYYQRGNTRNKEVDDFGINKKVVKILNKYGMWSEWINSEIAAIHKN