Scaffold Ga0206681_10000379

Overview

Basic Information

• Taxon OID: 3300021443
• Scaffold ID: Ga0206681_10000379
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24780
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F046021	Metagenome / Metatranscriptome	152	Y
F050380	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206681_1000037912	F019648	N/A	MTEKELNLLDRFASKYKIDCVPSEGKYDFWDFTYKWDDRKFYCEMKQRNFSLDFAKEKYREGLLLEMHKYERILRRTKNEKAAQGLYINFFDCDSVLVFNLNKTKIDNWVWRTMPESTEFGRKSFVYKYVTFIDYSKGKVLYI
Ga0206681_1000037913	F046021	N/A	MVKKKLTPKYNDNKAIKEKIDRLLKENASNVANSNTGSRLDIGDDDSVKEAWGIIQEKIKAIDPMFYEIIKER
Ga0206681_1000037928	F050380	N/A	MATEKRPGGTNTFGIRVIGIQDVQKKLKKLGLTAKRSRTEINKALRPAGTKLARGMQQAYKDEFNRSKRKRKSGRVPTYKTIGVVTARKSREPGLFVGPIKRRATPIRVHGKNSYNLAEMQIVGNKFQEPRKDIFLATAIKMEGVVLLQAEKDLDRLVEKMIKQAGL
Ga0206681_100003799	F032280	N/A	MADEITIKAINLLRSADPNLDEMDSLDKFIAHQGEVIKMMDQYASFVDHPQAEKLKARLKVFEESALAFTWVHTMMLAYKREKLLANSNEMEMANAVIELKQELDILNQLK