Scaffold Ga0206685_10069259

Overview

Basic Information

• Taxon OID: 3300021442
• Scaffold ID: Ga0206685_10069259
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1150
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206685_100692591	F013820	GGAG	MIATIISFIDKAIPGQKTYALMILGVGMTVCQMWGFHSFSQEAWGLLGIGGAATWKMGADRGKPAAKK
Ga0206685_100692592	F022754	N/A	MNELIITIMLIIPSPHKLIDWSVNEIPTQIQIIHKSGLEVSYTATPVSCKFQPRHKREMVFRSPNDRCYSVYDLSSPRFVRHPDHWYKVELPEPPLVNLGE
Ga0206685_100692594	F015741	N/A	MGCSFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESNPPEIVSEDLSKVSRNNDIYREVCKKDKSMADKMKDKANRVLDKTLMATE