NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206685_10055713

Scaffold Ga0206685_10055713


Overview

Basic Information
Taxon OID3300021442 Open in IMG/M
Scaffold IDGa0206685_10055713 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1284
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015347Metagenome / Metatranscriptome255Y
F020384Metagenome / Metatranscriptome224N
F024807Metagenome204N

Sequences

Protein IDFamilyRBSSequence
Ga0206685_100557131F015347GAGGMSILHLRCQRNARLMLEVAAAECDEMCGDLYGDADNPDMDTIYSAAEEMRRFADNLNNIADTLMVEYRKMDHHQHLIDLDDLRSESYAH
Ga0206685_100557132F020384N/AMRSNFTPSYKKSLQKLRNIVSRVLRNAGSSPHIAFETELRRAIRHIQIIKNTAPTGEEGDLAMVEAYRMYDRLQRLSDYPQYFSDNTQYRPQRVVSDRGKDYTNARPAAVRWDAAAMMAVPMSGVDRNWWRPPPRPAPVKHYTKEELENEYPAFTMSKKREADA
Ga0206685_100557133F024807GAGMTKRMLPFNLVYHDKDQQLTLALHDNPVTLTRDEVDGLIFHLDSFLFDMDRERKPQRSAEGVDHGKPQPSAEGADTHPEAHGEMLMAQYDDDPNPYHGDYSED
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