Scaffold Ga0206685_10013428

Overview

Basic Information

• Taxon OID: 3300021442
• Scaffold ID: Ga0206685_10013428
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2559
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026127	Metagenome / Metatranscriptome	199	Y
F036423	Metagenome / Metatranscriptome	170	N
F047120	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206685_100134281	F036423	N/A	FEARVAVEDISATEMVLGFVDTDVTSGVVNITDGLYFSNFSDPDSITAGTSLYLHCEKNGTITSSDALVDPYTGSTFVIEDGALQAASATQLATPSNSFIAGFNIVPKGSNGNVNTAVIQAYLGPVGKQPLPVASIATTNLPDDLALGLMMGTKNNTTTAAIMWVDYVKAISSRSFGSSTTK
Ga0206685_100134282	F047120	GGAG	MFDVKTKQLTASGQVTTKVSAGSNTLSAPARVLGLTVQCGATEGKIDLVDDGASGTVKFTQVTPAIKAGAEDLLQFDFPEMGLKFDTDLYVYFNHATKVNVIYG
Ga0206685_100134284	F026127	GAG	MFSLAIIGALNIMGCGIYEGMSMKPHKTSVTTTYGQDEVDKANDSKDQTKDSMQIIVKQEFLWKE