Scaffold Ga0206685_10012913

Overview

Basic Information

• Taxon OID: 3300021442
• Scaffold ID: Ga0206685_10012913
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2611
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001135	Metagenome / Metatranscriptome	767	Y
F002005	Metagenome / Metatranscriptome	605	Y
F003936	Metagenome / Metatranscriptome	461	Y
F012783	Metagenome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206685_100129133	F012783	GAGG	MAKKEYDHTDHMVVMKELLVLYQLKNETDQKILVATKENERLSELLKIKEKEDIPF
Ga0206685_100129134	F002005	GAG	MKDINELPQTFFITYYARTHNGEPIKGGGKFITRKASAYKPNGVIGKMFTDKNGTERFIYWDLDAGYWRHATGSWKVKAVA
Ga0206685_100129135	F003936	N/A	MIETFNIFWSSPIELRVIILAIPVMFGWFFWRENKRKQQEKKQERLNQIK
Ga0206685_100129137	F001135	GAGG	MTTIIYKDKKHKLPFVVKSHSTAMVKRTNPLSGQSTTLPGFAACVYDYTMYKTMEMEQLDKATKQQPGFSDNQDGWQVVRNGINFFRQYFAKEYMVLLD