Scaffold Ga0206685_10004900

Overview

Basic Information

• Taxon OID: 3300021442
• Scaffold ID: Ga0206685_10004900
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4103
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042376	Metagenome / Metatranscriptome	158	N
F047110	Metagenome	150	Y
F089413	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206685_1000490013	F089413	N/A	MRVETQTHIRNQGIAIAEVRGALQILAQTNLVGKENIQTRLKHWESKLTDIQNRLTEIENSEDLEWLEDKAGIEA
Ga0206685_100049002	F047110	N/A	MKNNKMKTVVSINWRIRDLIRDKLSFEKWHLDVFDSPAPKKVLNRIKAEAKELAEMKQAVLLAARDEAAA
Ga0206685_100049003	F042376	N/A	MRNLINKWFRSEVKTYQGAMLRYFYAPVTGFALVLAIVCGFVIGFDEVWRYWRVAALNF