Scaffold Ga0206685_10003215

Overview

Basic Information

• Taxon OID: 3300021442
• Scaffold ID: Ga0206685_10003215
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4991
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023875	Metagenome	208	N
F048555	Metagenome	148	N
F049935	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206685_100032151	F023875	N/A	MVTFLYGVLAITLCLYDITFTHSLFWITMLLFSLIQFFAYANGLRAQLERQFLKDYNETVKKTLEEQQQEEYNQIRNN
Ga0206685_100032152	F048555	N/A	MKSVTITIGDYDLEIIEQIFENEKKFEPSDPRDELMIEVMRQVKDNPKLDLGEDEAAEYEKAKTKFSKDLGADGKRIVKRTLPITNKIS
Ga0206685_100032153	F049935	N/A	MQTDIDFEFWDAQIKHFVSIIKGESASKKDKKVAKTHLIEIQSRLKRDVRDLNKYIKELESQL