NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206685_10002044

Scaffold Ga0206685_10002044


Overview

Basic Information
Taxon OID3300021442 Open in IMG/M
Scaffold IDGa0206685_10002044 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6143
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F009987Metagenome / Metatranscriptome310Y
F010942Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0206685_1000204412F009987AGGAGMIGSIIGNALGLGLKIMDKIDKNSDKASFEEFKDRKKKMDTSLADADVEGVDSMFEYLAERARGGNTGRKG
Ga0206685_1000204413F007004AGGAGGMKNLLIGLCLVLFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCREGGN
Ga0206685_1000204414F010942AGGAVETKESQSRASETQIVVLQKDIEHLQYVIKELEEQCEFVKNHFTTKNGERLDDIKVLHKRIDQHLRDELTFQENVRKKISDRFDVFDNRVRMLERWKWILWGALIVIGTISGAFVGYFLPGSNFYATFGP

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