Basic Information | |
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Taxon OID | 3300021442 Open in IMG/M |
Scaffold ID | Ga0206685_10002044 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6143 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.6907 | Long. (o) | -122.3448 | Alt. (m) | Depth (m) | 200 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007004 | Metagenome / Metatranscriptome | 360 | Y |
F009987 | Metagenome / Metatranscriptome | 310 | Y |
F010942 | Metagenome / Metatranscriptome | 297 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206685_1000204412 | F009987 | AGGAG | MIGSIIGNALGLGLKIMDKIDKNSDKASFEEFKDRKKKMDTSLADADVEGVDSMFEYLAERARGGNTGRKG |
Ga0206685_1000204413 | F007004 | AGGAGG | MKNLLIGLCLVLFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCREGGN |
Ga0206685_1000204414 | F010942 | AGGA | VETKESQSRASETQIVVLQKDIEHLQYVIKELEEQCEFVKNHFTTKNGERLDDIKVLHKRIDQHLRDELTFQENVRKKISDRFDVFDNRVRMLERWKWILWGALIVIGTISGAFVGYFLPGSNFYATFGP |
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