Scaffold Ga0213879_10154111

Overview

Basic Information

• Taxon OID: 3300021439
• Scaffold ID: Ga0213879_10154111
• Source Dataset Name: Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 668
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.28
  • Long. (^o): -43.5919

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024750	Metagenome / Metatranscriptome	204	Y
F067563	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213879_101541111	F067563	N/A	LVAFMAPWPNQSCPHPGCGQPIRDLLAEMVPNADQARPEFKAVLGQMPGGAITCPYCQQAVEYDTDGKSLVPSAQVPFRYSRNKMERRARDYGSHKSPPDIAMTPEQWVAEEKLMPGALNGYQYVEDGIP
Ga0213879_101541112	F024750	GAGG	MKLTHDELEFLSAWAREEWEPACYELPAHRLQLAHGVAGAQLIVFIKAWTEGEGRKDQEILAAAVNPQPRWPWSTIEDFAGRLAEASERRTHR