NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1017174

Scaffold Ga0213920_1017174


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1017174 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1876
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023094Metagenome / Metatranscriptome211Y
F023107Metagenome / Metatranscriptome211Y
F043392Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10171742F023107AGGGGGMTDVIEFSRTVMFVGDYFTLMTTVVLDESLRLEDEGDQDFAVRVASIFMKDYYGFDVKAVSKQIGVIDENGDEIDEDEF
Ga0213920_10171744F043392N/AVKIIAKDYHANGSAQPFMAALVDNPADGDIKLVIMFEDSDYVAVMSLDYLARDEDISAKYNGHHGDKYEQLRSELWDDFDN
Ga0213920_10171745F023094GAGGMTTLAAFQGEGFAVIGCDSRASDESGRVMDLATHKIIENNGYLIAVSGASRGGNISQFGWTPPAPPRTNNLESLDKFMTKKFIPSLRKVFIASGYDMKDDGDTAMQDSSFIIAVRGVIYP
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