Scaffold Ga0213920_1012843

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1012843
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2338
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y
F017972	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_10128432	F003863	GGAGG	MTESRQVSGMQAISYRNYRRARDRALVRLSHLYADEYRQLLVEERELDEQEGKKWVGVADNTRLTITTRTRANAVPDVAGRTDYESSNESYNGGEA
Ga0213920_10128433	F017972	GGAGG	VRTRHLQLVTHEHSVTTTIRSTVSSAFGPVSPGSTTLLAQETLRINQLRQLTELLNSLESVVANLNYKSSTALDTLLIATQGVRVALSQQTEDAGTKNC
Ga0213920_10128434	F013279	AGG	MKYEYKCPQCDSKLTIERSIHEQAKDPGCFDCHVPMTRVYDAPGIQFKGRGFYSNDK