NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1009309

Scaffold Ga0213920_1009309


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1009309 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3014
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F005558Metagenome396Y
F013279Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100930911F005558AGGMNEAISWSELAQLTHATQVERFGFCTCEDNQGQENPYEDCPKEVQE
Ga0213920_10093092F013279AGGAGMQYDYRCPECNSELTIERKITDEARPPSCFDCHIEMVRKFDAPSIQFKGTGWGHQ
Ga0213920_10093095F003863GAGGMKEVSGKQSIHYRNYRRARDRALVRLSHLYADEYRRLLTQERENDEQEGKKWIGISDDTRLTITTHTRANAVPDVAGRTDYESSDESYDG
Ga0213920_10093096F001477GGAGMSNVYTIHPPKSDLVLFYEVIEPDGANTWGGASAEHCIEWLSLAPSGSRVLVSAWDSDEEDAHLVGQTIDITDIVRAASL
Ga0213920_10093097F000821GGAGMNEEYLKAKFDLCIDQAEKNIQEQDVANAIKNLQRANRAMARLFGIEEGDSNE
Ga0213920_10093098F003212GGAGMKDRYLVTVEIETYDGDPRSWDWGTLLGYEDKVTVISSDYKGRVLPTEEGESQ
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