Scaffold Ga0213920_1003148

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1003148
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7194
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F019101	Metagenome	231	N
F057944	Metagenome	135	N
F060707	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100314812	F019101	AGCAGG	MLHEGRMELEGAKKTIEGVMADVKAIKGIWDWILSLFNQKPKSTAKSEDAPKPLAKAKTASKKQQSYEEMEIQIINDVGIQLGNFFDLQAQLKNHYDTLEAESKEHYDPTQNTSKKAIERSLVELQMENLDAQIREQMTIYAPAELKAIYTRFLKMYAKIQQEQEWARAEEVRKLRYQRWKKEQEEIRMIELLSGGVAVMFISLIFGWVMWQLRNLSGGF
Ga0213920_10031485	F006740	GGAG	MPTFESWSQENLAKFAKEAYIKMQEQQDYIEQLQNDLKDAINAYRSLIK
Ga0213920_10031486	F057944	AGGAG	MNDDLLPTGRMFPRTMQEAWPKDYVNEDIFSGPYREPQISDFAILCALIAIVWFFFFMFSKYIWN
Ga0213920_10031487	F060707	GGA	MRKPIGLSIPIRIETPEEAEVFSAMEQSSVRREAIRHPSKEAKLIAEVAILTELVNVLSDRVAQLEAKYETSTN