Scaffold Ga0213920_1001630

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1001630
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12047
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F028738	Metagenome / Metatranscriptome	190	N
F036603	Metagenome	169	N
F042894	Metagenome	157	N
F043355	Metagenome / Metatranscriptome	156	N
F053132	Metagenome / Metatranscriptome	141	N
F097320	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100163011	F043355	N/A	MENQNDRPPLTTIDKTGKYVLKLSLPKEDKVKVYDDGVSARLFFKTAEGLCFSKSYGTKYGKSLAMLVGKISGKFVSEPKADLSVPAFLDYLRPATNVYFEVEVEVTPDGEWQGKPKFKYKLNFPKGKASTIPTPTDW
Ga0213920_100163014	F097320	N/A	MTIQPDSLAATLRRLSNEARGLESYQTNFVTQHDITRISTDLSRLLAVLAITDPTRLEEPEDLIELRERLNIVRADLAALLVSVQNLHEKAEGMNGTLNNLENIVDSTDEVL
Ga0213920_100163016	F028738	N/A	VTSTTSKLGACQPINVILPDSTIVLMWIVKTEAIRQFAIQDMKQAEVELADFDAVILSKQAKHIREMTGATFEKDGNAYVIDAVSQSVADKINRKSVYLTPIWLSARSFFPR
Ga0213920_100163022	F042894	N/A	MPDPMSHLPDMLASPSHVIRGLSYQIAYARERVLQGDWTDKFARERIQLCAAVAEDNLRLSHGCKAVTIYANLTTGCRALLTWSYVDRNGEKDAGSVHPSIDGR
Ga0213920_100163024	F036603	N/A	MAKAKSQQSGSEANLLWATVALVACAGLTAVAVAFITDYILSSFQDSQTMALIITDAGTKSDDAKLEGQLTTATQGLKACRDLGWALAVGCLGVGVAVFLRFRRQKAS
Ga0213920_100163025	F001923	N/A	SPLAGRLPPYQQMSPPTPPIDHEQTHAIVKDGLVASILGGLAMTARLLLSTEPVSPGWVFRRISAAAITAALVGYAIQEHISSPGLRMGAIGAAGYAAPEVLDYMLKYIKARGEAEVAKVTKKLPSNGKGKKPAKRK
Ga0213920_10016307	F053132	AGG	MPSPTDDELAEMSRAWGVSIERLRFLATCPHYDSKPHIRVDDFKDPTEKHIARSIREAIRGSWTPEDAAKIGKVSLKVIQAFVCRHGIIWPPGCRRRLEWGRGTTHTHRLNEEHANLLAKGRITMAEAAAKGIAEGLTAKETAEKYGFSAPGMYNSAVRQGLRFISHKEKFGVPRGLPNVPKA