Scaffold Ga0213920_1000435

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1000435
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33873
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (91.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010680	Metagenome / Metatranscriptome	300	Y
F075600	Metagenome / Metatranscriptome	118	Y
F076853	Metagenome / Metatranscriptome	117	Y
F083897	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100043510	F083897	GAG	MAKDIAYVKPDKGQEGDYRSLGPIRVCPCGSDTWNVKCKFDEDGTIGIYFLDMRCLLCDSLAVAPYEGQLNV
Ga0213920_100043511	F075600	N/A	MEKITVGHKSFSQFSTWIRCGKAYQLERILEAPQSPAWWFVGGSAFHSAAEKFLLNEFEKKNG
Ga0213920_100043522	F076853	AGG	MCKECGCNDNAIGGTPDNLTGKPTASPYGLYKGVGGTDK
Ga0213920_10004354	F010680	GAG	MIVDLSQDEVRVCTNLAVERWLTKFGSVDRPNYAAGKAAGRLEHELLANVRANVSEWAVAKEYNLSWSVPWYPNGLHTRRKDIGDVGTYHEVRTVRTQKAIPFWNKDAGKYIFGTKILDEEYYSQVEVYGSFKSDEYMTEDYWDESINGWRVPVEEIIYV