Scaffold Ga0213920_1000397

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1000397
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36301
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (80.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F054870	Metagenome / Metatranscriptome	139	N
F058557	Metagenome / Metatranscriptome	135	Y
F063689	Metagenome	129	Y
F073551	Metagenome	120	Y
F086839	Metagenome / Metatranscriptome	110	N
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100039714	F086839	AGG	MEAKFEVSGLKETLDVFNQLQEQIGDKQAKSKILIPAVREAMKPVLALAKAMSPKDTGLLESSLYITARRPTKKDMGSRYISPQDSVISLVSTRPIPRKVKQEFYSKYSGLKGKEYKQAKKQFYAEQGLIYDARAIANEFGTAKMASHPFMRSSLESQAQTVSTLLGQILNLKIESFKSKQKLTK
Ga0213920_100039718	F000934	AGTAG	MPLNTILSVAESIAIKDQKFVGQVISRNQRISTSEILSVQPFQFEMKPMNYLLLSQNKGLLSELRVADRLSEQLLNFTSTGWTNYINYQGDMSSAQIIACQYQTLSTGKTIVLGSLPSILSTQYIVKAGDYLQIGRYSYIATSDVLRGTGSTVNIPVHRSILTTVQTSDPVVIGQYGTNSFAQTGITFPVVLTQYPTYTLVPMTNDSFIAWNSSFIALELVLN
Ga0213920_100039724	F001991	GAGG	MAVFNKNSLSQISGFDNPIIAGELVYNQKTYWNLAMATDGVPVDLTGATISASIIRRSVTNLHDTRYGLTFDIADYTPTPTAIDLTIANRSDAEGLFTLVIDESAWSVISTDPQLDINATDCVGFSGRIKISFPASGTTPAQDNIIFLLFLVRSDGVVS
Ga0213920_100039727	F073551	N/A	LENSDTIDDYFNFLQNKTIKDMGADSYDGKNYLVILLSDGSIAYIYSDSSLYMSVEKHLI
Ga0213920_100039736	F054870	AGGA	MNKLLIALLISLPITSIGGEAPKLRYNWVEKEWHYAPSNAKLKYNWTNDKYEFVAPNSELKYNSQNDSFEYVQSSTDPYKSDIGDNNE
Ga0213920_100039745	F104778	GGA	METVKGYMIEEFDKNGNLVWKMFSFFEPDSIQWMKDIKGKSHNLVISKLGVIESKEINNIEKKYDSSKFVVGL
Ga0213920_100039747	F063689	GAG	MEVLFRYLVFDDVGDPIRRFRTKHEAECYVLHRPNHKIVRLPPPPKENVFDLIKDEPLF
Ga0213920_10003979	F058557	GGA	MAIKRYENVDVNTLTFGTDAYGEQTTTITKKFTGRPLVSSVKNSLQITGDTRIYQDLINFKFNFTPWMQDVIVNQNLYSFKWRNQDWRITNAIESDDKMSVTMLCYRSDPVTKV