Scaffold Ga0213920

Basic Information
Taxon OID	3300021438 Open in IMG/M
Scaffold ID	Ga0213920_1000335 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021438 Open in IMG/M

Scaffold ID

Ga0213920_1000335 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40013
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (80.28%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

40013

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (80.28%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002997	Metagenome / Metatranscriptome	514	Y
F026565	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100033547	F026565	GGA	MAIFNQNTLTQVSGFDNPIIAGELVWEQQTYWNLAIKASDNVTPLDLTGATIDAQIIRRAISNIQDTRNGLSFDIANYSPTPSPVSLTITNRSNAAGLFTLVIDDSAWGLIDSDPELDINAQDCVGFSGRIKISFPTAGSNPANDYIIFLLFLVRSDGIVVE
Ga0213920_100033548	F000324	AGG	MTIRVEAKHTVTYDGASLYVFHPNKGEGLPRHQHAYSHLTMVHAGSVLVTKEGKSLTMTKDTKPVNLVANEWHELEALEDGTVFVNVFAEGKY
Ga0213920_100033554	F002085	GGAG	MNVIAPVDGTTNIRHAEFVRVTTASGVYRFSTAPYAITVSAVDSQPFSGLSQLVAIGDATRDIKSTANETTVTLVGIDTALLGWVLGQNIKGSKIEMWHGFFNTDDQLLTSGGTGGLYKFFTGNVTSFQISETWDEDHKTYLGVITVSASSIQLILQNRTAGRFTNDNSWQFFNPGDTSMARVPYLESINYPFGKGASPNS
Ga0213920_100033555	F000934	GAGG	MALTEILKNSESVGINDQRFIGQSISRNQKITTSEVLTVVPFIFEMRPMNYLLYSKSRALLNSLRIPDKALEQFLNFSSTGWVNYIQYQGDMTQPQIEACRWQTSSANKTLVLGSLPSIPSTKYIVKAGDFCQVGRYSYIATADVLRGSGTTVNIPVHRSLLAPVTVATVAVIGEFGNTVSLGGTSYTGVTFPVILREYPTYTLIPMTNDSYIQWSGIFKAMESVL
Ga0213920_100033563	F002997	N/A	MAIARFEQITVNNLTFGESDFGEQSTTQTKWFDTRARVTDVANSLKISDKYRLYQDLTNFTLNYTPNIKQIVDAQNLFSITWRGADWRITDVREANDRMTVLLMCYRTDPQTSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213920_1000335

Overview

Ecosystem & Geography

Associated Families

Sequences