NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1000326

Scaffold Ga0213920_1000326


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1000326 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40857
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (77.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F006544Metagenome / Metatranscriptome370Y
F008808Metagenome327Y
F031484Metagenome / Metatranscriptome182Y
F041080Metagenome / Metatranscriptome160Y
F105020Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100032616F001515AGGAMTSKSSFDLDFGYGRKGERLVEELLTGGKTVEVKRDRKWWITNNLYIEVECWFNKSKSWEPSGLMVTEAAYWAFVLEQSVVIVPTHILKKGVQELGREISCEIPPNKSKGYLITVEDLLTMTRKYKNEKVDDGLETN
Ga0213920_100032618F008808AGCAGGMKPIKPCPECGEQFENVFEATDHLLEEDEEFDPALILPNGYRLMIGSLLRCFYRYADDPEKIKDVAQDTYMTLFTVEMEPSTVVEVIEEMIVGSSMAGLDDELKELLEGGE
Ga0213920_100032627F031484AGGAGMNTEKLTAIVTTYARAAVPTVVALYASGTTDPKALVYAFLSAFIAPIWKALDPKAKEFGIGSKK
Ga0213920_100032645F105020AGTAGGMHSHVSKVLEWGFTPEHDFQATLWGCVLCDETNPTPFPNEEEVEINHNECGEDCFGCKAKGLQLNTGDTTRDIPDKKWTSELQAYRNAREQGMQPAGTTRKHIEEAYSASEALGKAYNSETMPKAKDINKKTTEVLKEIGAV
Ga0213920_100032654F006544AGGMTTLAAIQGDGWVVMGCDSRSSDEDGRPMNMATHKIVENNGALIAGSGAGRGSNILQFGWKAPKPTANENLDVFMTQKFIPSMRQAFIDAGYDMKEDGDAASHDSQFLVSIRGTVYPIFEDYSWDRDIRGIYYAGSGSTIALGAMAALGIDDVQNAAQAERLIRKAIEIATEWDIYTSGPIITKIQFTK
Ga0213920_10003269F041080GAGGMSATQIQVIADEISALASEVAYLALSVDTSSEYPKRGTIVRALPTQNRFKAKSMWVSLGDGTYKHLTGSKGLITTHARLDGYVSTVFEA

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