Basic Information | |
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Taxon OID | 3300021438 Open in IMG/M |
Scaffold ID | Ga0213920_1000326 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40857 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (77.19%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001515 | Metagenome / Metatranscriptome | 679 | Y |
F006544 | Metagenome / Metatranscriptome | 370 | Y |
F008808 | Metagenome | 327 | Y |
F031484 | Metagenome / Metatranscriptome | 182 | Y |
F041080 | Metagenome / Metatranscriptome | 160 | Y |
F105020 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213920_100032616 | F001515 | AGGA | MTSKSSFDLDFGYGRKGERLVEELLTGGKTVEVKRDRKWWITNNLYIEVECWFNKSKSWEPSGLMVTEAAYWAFVLEQSVVIVPTHILKKGVQELGREISCEIPPNKSKGYLITVEDLLTMTRKYKNEKVDDGLETN |
Ga0213920_100032618 | F008808 | AGCAGG | MKPIKPCPECGEQFENVFEATDHLLEEDEEFDPALILPNGYRLMIGSLLRCFYRYADDPEKIKDVAQDTYMTLFTVEMEPSTVVEVIEEMIVGSSMAGLDDELKELLEGGE |
Ga0213920_100032627 | F031484 | AGGAG | MNTEKLTAIVTTYARAAVPTVVALYASGTTDPKALVYAFLSAFIAPIWKALDPKAKEFGIGSKK |
Ga0213920_100032645 | F105020 | AGTAGG | MHSHVSKVLEWGFTPEHDFQATLWGCVLCDETNPTPFPNEEEVEINHNECGEDCFGCKAKGLQLNTGDTTRDIPDKKWTSELQAYRNAREQGMQPAGTTRKHIEEAYSASEALGKAYNSETMPKAKDINKKTTEVLKEIGAV |
Ga0213920_100032654 | F006544 | AGG | MTTLAAIQGDGWVVMGCDSRSSDEDGRPMNMATHKIVENNGALIAGSGAGRGSNILQFGWKAPKPTANENLDVFMTQKFIPSMRQAFIDAGYDMKEDGDAASHDSQFLVSIRGTVYPIFEDYSWDRDIRGIYYAGSGSTIALGAMAALGIDDVQNAAQAERLIRKAIEIATEWDIYTSGPIITKIQFTK |
Ga0213920_10003269 | F041080 | GAGG | MSATQIQVIADEISALASEVAYLALSVDTSSEYPKRGTIVRALPTQNRFKAKSMWVSLGDGTYKHLTGSKGLITTHARLDGYVSTVFEA |
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