Scaffold Ga0213920

Basic Information
Taxon OID	3300021438 Open in IMG/M
Scaffold ID	Ga0213920_1000326 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021438 Open in IMG/M

Scaffold ID

Ga0213920_1000326 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40857
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (77.19%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

40857

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (77.19%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F006544	Metagenome / Metatranscriptome	370	Y
F008808	Metagenome	327	Y
F031484	Metagenome / Metatranscriptome	182	Y
F041080	Metagenome / Metatranscriptome	160	Y
F105020	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100032616	F001515	AGGA	MTSKSSFDLDFGYGRKGERLVEELLTGGKTVEVKRDRKWWITNNLYIEVECWFNKSKSWEPSGLMVTEAAYWAFVLEQSVVIVPTHILKKGVQELGREISCEIPPNKSKGYLITVEDLLTMTRKYKNEKVDDGLETN
Ga0213920_100032618	F008808	AGCAGG	MKPIKPCPECGEQFENVFEATDHLLEEDEEFDPALILPNGYRLMIGSLLRCFYRYADDPEKIKDVAQDTYMTLFTVEMEPSTVVEVIEEMIVGSSMAGLDDELKELLEGGE
Ga0213920_100032627	F031484	AGGAG	MNTEKLTAIVTTYARAAVPTVVALYASGTTDPKALVYAFLSAFIAPIWKALDPKAKEFGIGSKK
Ga0213920_100032645	F105020	AGTAGG	MHSHVSKVLEWGFTPEHDFQATLWGCVLCDETNPTPFPNEEEVEINHNECGEDCFGCKAKGLQLNTGDTTRDIPDKKWTSELQAYRNAREQGMQPAGTTRKHIEEAYSASEALGKAYNSETMPKAKDINKKTTEVLKEIGAV
Ga0213920_100032654	F006544	AGG	MTTLAAIQGDGWVVMGCDSRSSDEDGRPMNMATHKIVENNGALIAGSGAGRGSNILQFGWKAPKPTANENLDVFMTQKFIPSMRQAFIDAGYDMKEDGDAASHDSQFLVSIRGTVYPIFEDYSWDRDIRGIYYAGSGSTIALGAMAALGIDDVQNAAQAERLIRKAIEIATEWDIYTSGPIITKIQFTK
Ga0213920_10003269	F041080	GAGG	MSATQIQVIADEISALASEVAYLALSVDTSSEYPKRGTIVRALPTQNRFKAKSMWVSLGDGTYKHLTGSKGLITTHARLDGYVSTVFEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213920_1000326

Overview

Ecosystem & Geography

Associated Families

Sequences