Scaffold Ga0213920_1000181

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1000181
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61337
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (82.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F005025	Metagenome / Metatranscriptome	414	Y
F023293	Metagenome	210	Y
F038156	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100018112	F000340	N/A	MNWSDVLKAVIPIVVMALAWLLGQVNSFSERLTKIEGQMPALITKEGVPTDSPISAERRHVLKEQIYGDIHDLQVRLKLMEERAKVPR
Ga0213920_100018121	F005025	AGGAG	MDRKEVKDIADTEVRAHEKRMHKGAKGMKAGGPTTDDRMKYGKNMARVMNQRSGARGR
Ga0213920_100018167	F038156	GAGG	MKRELYDFITPPDSKGAHVSLYYFPHNQRSSLGLQSLAPNYNEPPCMVANYDRDGNLLYTRFIFKDGTWRDD
Ga0213920_100018168	F023293	GGA	MTKYGILDDEGKVIRWVWHLPPYPHVVEKIKRKRKPKLDLSNVPDALF