Scaffold Ga0213920

Basic Information
Taxon OID	3300021438 Open in IMG/M
Scaffold ID	Ga0213920_1000091 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021438 Open in IMG/M

Scaffold ID

Ga0213920_1000091 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	98621
Total Scaffold Genes	171 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	142 (83.04%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

98621

Total Scaffold Genes

171 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

142 (83.04%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036210	Metagenome / Metatranscriptome	170	Y
F037567	Metagenome / Metatranscriptome	167	N
F059898	Metagenome / Metatranscriptome	133	Y
F085623	Metagenome / Metatranscriptome	111	Y
F089832	Metagenome	108	Y
F090247	Metagenome	108	Y
F104075	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_1000091119	F085623	N/A	MFEHQVIDIHHNPHLKKKPYLIRVFSYNNHYPRELRLDEVEFKDLYNILNYNENLQEENN
Ga0213920_1000091131	F036210	GAGG	MRNRVLTEKNRVEIQRKYIDHILGSLDFMEIKDRLRDYLETEKDKESDAALEAEIKHEAPDVLVDNWEDMKSPATLTKGRH
Ga0213920_1000091138	F104075	GGAGG	MKIANKKRKQVSVEFLEHIKNTVNDMLSTRIPQSTKQKLCILVEKMLMETKSYEGFKYLYWSRYGCLDWEEAKQKGVYKHVPSEYILGPDATDNPDFISDIQGEYSRRYT
Ga0213920_1000091159	F059898	AGAAG	MTEEREKAIIYLLSFFKNRMAAVNKHNVDKAKELIGLHEISVSELINKYVELVYKNS
Ga0213920_1000091161	F037567	AGG	MEWISFFGPRRPINGQKVYYFGEYIGVWQGRYEIHRDDPVSEHILICEESPGIVDRMDAPWWMPYEGQPKPQRPESDYPKDYPKYD
Ga0213920_1000091168	F089832	GGTGG	MSKFYIKSNTLELIYSTDKSPLEAAVVALGETNKFDVLDEHFYIDERGMKDYSTALPDTIVIPTKLVAAEAGWTM
Ga0213920_1000091171	F090247	N/A	KKRPKRKNLADAWRKSLPKLVIIDDTKYVVCPEIRRGRGVVTCTQTKGSVDCNLCVKGLANVLFPSH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213920_1000091

Overview

Ecosystem & Geography

Associated Families

Sequences