Scaffold Ga0210391

Basic Information
Taxon OID	3300021433 Open in IMG/M
Scaffold ID	Ga0210391_10002856 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14812
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (81.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14812

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (81.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001010	Metagenome / Metatranscriptome	807	Y
F002004	Metagenome / Metatranscriptome	605	Y
F002288	Metagenome / Metatranscriptome	574	Y
F002929	Metagenome / Metatranscriptome	520	Y
F036259	Metagenome	170	Y
F086702	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210391_100028561	F086702	N/A	DATHGGANTNDPIMERLRQCPEAFKVGEILGKAFDSLKCARDGSEIGERYLPPSGVVIPPIV
Ga0210391_1000285610	F002288	GGA	MGEEDGVHKRRMFRWPKEARELVREYKERTSRSREHDETGRRILVTKLAAVSGNPRDACLRFLRELGVDQKRAYREWTKPEQQRLLDLIVTMPVEEAAKILRRPAGSVRSMLHRLGMGGTTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRALTTAGTKANIIHADDFCQFVKEHGRAVISRRLTYDALWFVQNYVFPPSHAELLSVRGTYKRHDPDDATNSNTESQPAGGSEEGGGQEG
Ga0210391_1000285613	F001010	AGGA	MQNTGDPRVRGEIVAIIEHVLSDRPGEWRVSIVGSHANDNWEMKVEGPEGFERSYTLLGGAGEHEPAAIGNLVVKLLPARKP
Ga0210391_1000285614	F002004	GAG	MRKIPNSRRLEEHISRALNQIKKPSTAEEITELLNRDLELEDRPFQTKEVAEWLRTTGYTALTLYWSRTRPRR
Ga0210391_100028565	F002929	AGGTGG	MSQSFRAVKEIWNVHSSCFIEPEKLIVLLHDLAARVGTASDEHEYGDKQAVWLENGRKVLDYMEADERFSAVSFRDSMEEQRIAVNENGLNALIDSMRSLSKQWRSSIGKHGELVFYIDA
Ga0210391_100028569	F036259	GAG	MLGAHSRGFDWKEIAEVLHITRAAARATFWREIKRSRSKTVEAQPPAIVSHGESDSDTLKLGKARGSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210391_10002856

Overview

Ecosystem & Geography

Associated Families

Sequences