NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10002668

Scaffold Ga0210391_10002668


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10002668 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15360
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F034250Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_1000266817F034250N/AMPEGEAIDFKASTQFVSAHGALIVMDAPLLPGQTVRLFNEMTSESVECFVTSVREKQEGRLVGLGFATPKHDFWHVVFPKAGTRQAVRSSQTGSLVEPGKSPNILPQS
Ga0210391_100026684F000781N/AMLTVAQLAPIKDRDPYLYETLTKIVASVNATSQAAGVDPSTPSPAPTAVASINVQASNGWFDLSVSDPSNARPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGLPPAAVAGGGTTGPTPLPSSGSGVLHNGQIRGGNGFGINPGSRVTRQTIL
Ga0210391_100026685F000703N/AMQVREYRESDLAALRAIHAAQGFEYPLPNLSNPLFVTKLIVSEDGEASEASEGAVRPEKIVGAALLRLTAEAYLLLDPNAGTPRDRWQWLLQLHAATERDAWQRGLEDVHAWLPPPIASKFGKRITKLGWNRDDAWTPYCKRLACKLVNSEP
Ga0210391_100026688F000624GAGMPIHWSMIVAAIVPVGVQFVLFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYAALHAIARKQGIEPSETPLVHFVELNGRRHRD
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Institute for Fundamental Biomedical Research
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