Scaffold Ga0210391_10000073

Overview

Basic Information

• Taxon OID: 3300021433
• Scaffold ID: Ga0210391_10000073
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116420
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (81.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005124	Metagenome / Metatranscriptome	411	Y
F011599	Metagenome / Metatranscriptome	289	Y
F016010	Metagenome / Metatranscriptome	250	N
F061074	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210391_10000073109	F016010	GGAGG	MNKHIVQLIRERFYPLVRFCGPQSAGELEIEAVRATVYLGELSIWLWPAKSSHNGVLSDEQLGDVVSPHLLVRNLLLSAQTSMQCLSCHLDRIEAADGDNVSLLRYYLEDSAATVVDGMALGRILGPRAGETAQ
Ga0210391_1000007375	F011599	GGA	MLAEMGEHQLTIRDYLRHSNLHVTNKYLQATSKTKRLAHDKLVDAILPTGILPKTNLVLV
Ga0210391_1000007380	F005124	AGAAG	MTWRTKHEYARLLFVVLRACTVAIKDIRDVEHSVEVTAETLYEAIATALAALQQDTWVGEIGQGFATVTVVVQQPPVKHEVKMKDFVSWLGRQGRSPAEVVLKQKLERILGKINHRRT
Ga0210391_1000007385	F061074	GAGG	MASKREKPLERHLYCRGRKCRSVTWDTLRISIDGPHARYTKGHRGFYNGDIDGCIDDFLVVLKCEARRLLRECAKQTPALKQFNLKFA